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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Feb 05, 2008 |
| Title |
Illumina HumanHap550 Genotyping BeadChip v1 |
| Technology type |
oligonucleotide beads |
| Distribution |
commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Illumina, Inc. |
| Manufacture protocol |
See manufacturer's website (http://illumina.com)
|
| Catalog number |
WG-30-503 |
| |
|
| Description |
Version 1, Illumina Sentrix HumaHap550 Genotyping BeadChip
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| |
|
| Web link |
http://illumina.com/pages.ilmn?ID=154
|
| Submission date |
Jan 29, 2008 |
| Last update date |
Feb 10, 2009 |
| Contact name |
GEO admin |
| E-mail(s) |
[email protected]
|
| Organization name |
NCBI/NLM/NIH
|
| Street address |
9000 Rockville Pike
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
| |
|
| Samples (1539)
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GSM261048, GSM261049, GSM262535, GSM262536, GSM263990, GSM263991
GSM263992, GSM263994, GSM263995, GSM263996, GSM263997, GSM263998, GSM264000, GSM264001, GSM264003, GSM264004, GSM264005, GSM264008, GSM264009, GSM264010, GSM264024, GSM264025, GSM264026, GSM264028, GSM264029, GSM264031, GSM264032, GSM264033, GSM264035, GSM264036, GSM264038, GSM264039, GSM264040, GSM264042, GSM264043, GSM264045, GSM264046, GSM264047, GSM264049, GSM264050, GSM264051, GSM264053, GSM264054, GSM264055, GSM264056, GSM264059, GSM264060, GSM264061, GSM264063, GSM264064, GSM264065, GSM264067, GSM264068, GSM264069, GSM264075, GSM264076, GSM264077, GSM264078, GSM264079, GSM264080, GSM264081, GSM264082, GSM264083, GSM264084, GSM264085, GSM264086, GSM264087, GSM264089, GSM264090, GSM264091, GSM264092, GSM264093, GSM264094, GSM264095, GSM264096, GSM264097, GSM264098, GSM264099, GSM264100, GSM264101, GSM264102, GSM264103, GSM264104, GSM264105, GSM264107, GSM264109, GSM264110, GSM264111, GSM264112, GSM264113, GSM264114, GSM264115, GSM264116, GSM264117, GSM264118, GSM264119, GSM264120, GSM264121, GSM264122, GSM264123, GSM264124, GSM264125, GSM264126, GSM264127, GSM264162, GSM264163, GSM264164, GSM264165, GSM264167, GSM264168, GSM264169, GSM264170, GSM264171, GSM264172, GSM264173, GSM264174, GSM264175, GSM264176, GSM264177, GSM264178, GSM264179, GSM264180, GSM264181, GSM264182, GSM264183, GSM264184, GSM264185, GSM264186, GSM264187, GSM264188, GSM264189, GSM264190, GSM264191, GSM264192, GSM264194, GSM264195, GSM264196, GSM264197, GSM264198, GSM264199, GSM264200, GSM264201, GSM264202, GSM264204, GSM264205, GSM264206, GSM264207, GSM264208, GSM264209, GSM264210, GSM264211, GSM264213, GSM264214, GSM264215, GSM264219, GSM264220, GSM264221, GSM264222, GSM264223, GSM264224, GSM264225, GSM264226, GSM264227, GSM264228, GSM264229, GSM264230, GSM264231, GSM264232, GSM264233, GSM264234, GSM264235, GSM264236, GSM264237, GSM264238, GSM264239, GSM264240, GSM264241, GSM264242, GSM264243, GSM264244, GSM264245, GSM264246, GSM264247, GSM264248, GSM264249, GSM264250, GSM264251, GSM264252, GSM264253, GSM264255, GSM264256, GSM264257, GSM264258, GSM264259, GSM264260, GSM264261, GSM264262, GSM264263, GSM264264, GSM264265, GSM264266, GSM264267, GSM264268, GSM264269, GSM264318, GSM264319, GSM264320, GSM264321, GSM264322, GSM264323, GSM264324, GSM264325, GSM264326, GSM264327, GSM264328, GSM264329, GSM264330, GSM264331, GSM264332, GSM264333, GSM264334, GSM264335, GSM264336, GSM264337, GSM264338, GSM264339, GSM264340, GSM264341, GSM264342, GSM264343, GSM264344, GSM264345, GSM264346, GSM264347, GSM264348, GSM264349, GSM264350, GSM264351, GSM264352, GSM264353, GSM264354, GSM264355, GSM264356, GSM264357, GSM264358, GSM264359, GSM264360, GSM264361, GSM264362, GSM264363, GSM264364, GSM264365, GSM264366, GSM264367, GSM264368, GSM264369, GSM264370, GSM264371, GSM264372, GSM264373, GSM264374, GSM264375, GSM264376, GSM264377, GSM264378, GSM264379, GSM264380, GSM264381, GSM264382, GSM264383, GSM264384, GSM264385, GSM264386, GSM264387, GSM264388, GSM264389, GSM264390, GSM264391, GSM264392, GSM264393, GSM264394, GSM264395, GSM264396, GSM264397, GSM264398, GSM264399, GSM264400, GSM264401, GSM264402, GSM264403, GSM264404, GSM264405, GSM264406, GSM488340, GSM488341, GSM488342, GSM488343, GSM488344, GSM488345, GSM488346, GSM488347, GSM488348, GSM488349, GSM488350, GSM488351, GSM488352, GSM488353, GSM488354, GSM488355, GSM488356, GSM488357, GSM488358, GSM488359, GSM488360, GSM488361, GSM488362, GSM488363, GSM488364, GSM488365, GSM488366, GSM488367, GSM488368, GSM488369, GSM488370, GSM488371, GSM488372, GSM488373, GSM488374, GSM488375, GSM488376, GSM488377, GSM488378, GSM488379, GSM488380, GSM488381, GSM488382, GSM488383, GSM488384, GSM488385, GSM488386, GSM488387, GSM488388, GSM488389, GSM488390, GSM488391, GSM488392, GSM488393, GSM488394, GSM488395, GSM488396, GSM488397, GSM488398, GSM488399, GSM488400, GSM488401, GSM488402, GSM488403, GSM488404, GSM488405, GSM488406, GSM488407, GSM488408, GSM488409, GSM488410, GSM488411, GSM488412, GSM488413, GSM488414, GSM488415, GSM488416, GSM488417, GSM488418, GSM488419, GSM488420, GSM488421, GSM488422, GSM488423, GSM488424, GSM488425, GSM488426, GSM488427, GSM488428, GSM488429, GSM488430, GSM488431, GSM488432, GSM488433, GSM488434, GSM488435, GSM488436, GSM488437, GSM488438, GSM488439, GSM488440, GSM488441, GSM488442, GSM488443, GSM488444, GSM488445, GSM488446, GSM488447, GSM488448, GSM488449, GSM488450, GSM488451, GSM488452, GSM488453, GSM488454, GSM488455, GSM488456, GSM488457, GSM488458, GSM488459, GSM488460, GSM488461, GSM488462, GSM488463, GSM488464, GSM488465, GSM488466, GSM488467, GSM488468, GSM488469, GSM488470, GSM488471, GSM488472, GSM488473, GSM488474, GSM488475, GSM488476, GSM488477, GSM488478, GSM488479, GSM488480, GSM488481, GSM488482, GSM488483, GSM488484, GSM488485, GSM488486, GSM488487, GSM488488, GSM488489, GSM488490, GSM488491, GSM488492, GSM488493, GSM488494, GSM488495, GSM488496, GSM488497, GSM488498, GSM488499, GSM488500, GSM488501, GSM488502, GSM488503, GSM488504, GSM488505, GSM488506, GSM488507, GSM488508, GSM488509, GSM488510, GSM488511, GSM488512, GSM488513, GSM488514, GSM488515, GSM488516, GSM488517, GSM488518, GSM488519, GSM488520, GSM488521, GSM488522, GSM488523, GSM488524, GSM488525, GSM488526, GSM488527, GSM488528, GSM488529, GSM488530, GSM488531, GSM488532, GSM488533, GSM488534, GSM488535, GSM488536, GSM488537, GSM488538, GSM488539, GSM488540, GSM488541, GSM488542, GSM488543, GSM488544, GSM488545, GSM488546...
Accession list truncated, click here to browse through all related public accessions
You can also download a list of all accessions here
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| Series (6)
|
| GSE10331 |
Genotype, haplotype and copy number variation in worldwide human populations. |
| GSE19385 |
Genotyping in Neuroblastoma Primary tumors |
| GSE20623 |
SNP genotyping of cryptic complexity in structural chromosome abnormalities previously detected by cytogenetic analysis |
| GSE27364 |
Prospective comparison of genome-wide aCGH platforms for the detection of CNVs in MR (Illumina HumanHap550) |
| GSE27367 |
Prospective comparison of genome-wide aCGH platforms for the detection of CNVs in MR |
| GSE131189 |
Structural variation targets neurodevelopmental genes and identifies SHANK2 as a tumor suppressor in neuroblastoma |
|
| Relations |
| Alternative to |
GPL6981 (official) |
| Data table header descriptions |
| ID |
|
| SNP_ID |
ncbi SNP accession |
| PROBE |
PROBE Name |
| Alleles |
SNP alleles |
| Chromosome |
Chromosome |
| IlmnStrand |
Illumina Strand Info |
| AddressA_ID |
Illumina Address Info |
| CustomerStrand |
Illumina Strand Info |
| TopGenomicSeq |
Flanking Sequence |
| Data table |
| ID |
SNP_ID |
PROBE |
Alleles |
Chromosome |
IlmnStrand |
AddressA_ID |
CustomerStrand |
TopGenomicSeq |
| MitoA10045G-13273284_B_R_IFB1141652022:0 |
|
MitoA10045G |
[T/C] |
M |
Bot |
904860368 |
Top |
TGTGGTTTGACTATTTCTGTATGTCTCCATCTATTGATGAGGGTCTTACTCTTTTAGTATAAATAGTACCGTTAACTTCCAATTAACTAGTTTTGACAAC[A/G]TTCAAAAAAGAGTAATAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCCTTACTACTAATAATTATTACATTTTGACTACCACAACTCAACGG |
| MitoA10551G-13273286_T_F_IFB1141639111:0 |
|
MitoA10551G |
[A/G] |
M |
Top |
905860131 |
Top |
ATGATAATCATATTTACCAAATGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCTCAT[A/G]TCCTCCCTACTATGCCTAGAAGGAATAATACTATCGCTGTTCATTATAGCTACTCTCATAACCCTCAACACCCACTCCCTCTTAGCCAATATTGTGCCTA |
| MitoA11252G-13273288_B_R_IFB1141661584:0 |
|
MitoA11252G |
[T/C] |
M |
Bot |
903990168 |
Top |
CTATCATCACCCGATGAGGCAACCAGCCAGAACGCCTGAACGCAGGCACATACTTCCTATTCTACACCCTAGTAGGCTCCCTTCCCCTACTCATCGCACT[A/G]ATTTACACTCACAACACCCTAGGCTCACTAAACATTCTACTACTCACTCTCACTGCCCAAGAACTATCAAACTCCTGAGCCAACAACTTAATATGACTAG |
| MitoA11468G-13273289_B_R_IFB1141719645:0 |
|
MitoA11468G |
[T/C] |
M |
Bot |
901990681 |
Top |
TTATAGTAAAGATACCTCTTTACGGACTCCACTTATGACTCCCTAAAGCCCATGTCGAAGCCCCCATCGCTGGGTCAATAGTACTTGCCGCAGTACTCTT[A/G]AAACTAGGCGGCTATGGTATAATACGCCTCACACTCATTCTCAACCCCCTGACAAAACACATAGCCTACCCCTTCCTTGTACTATCCCTATGAGGCATAA |
| MitoA11813G-13273292_T_F_IFB1141667833:0 |
|
MitoA11813G |
[A/G] |
M |
Top |
904780630 |
Top |
CCCACGGACTCACATCCTCATTACTATTCTGCCTAGCAAACTCAAACTACGAACGCACTCACAGTCGCATCATAATCCTCTCTCAAGGACTTCAAACTCT[A/G]CTCCCACTAATAGCTTTTTGATGACTTCTAGCAAGCCTCGCTAACCTCGCCTTACCCCCCACTATTAACCTACTGGGAGAACTCTCTGTGCTAGTAACCA |
| MitoA12309G-13273294_T_F_IFB1141664161:0 |
|
MitoA12309G |
[A/G] |
M |
Top |
906590470 |
Top |
AGAAAGCTCACAAGAACTGCTAACTCATGCCCCCATGTCTAACAACATGGCTTTCTCAACTTTTAAAGGATAACAGCTATCCATTGGTCTTAGGCCCCAA[A/G]AATTTTGGTGCAACTCCAAATAAAAGTAATAACCATGCACACTACTATAACCACCCTAACCCTGACTTCCCTAATTCCCCCCATCCTTACCACCCTCGT |
| MitoA13106G-13273298_B_R_IFB1141641623:0 |
|
MitoA13106G |
[T/C] |
M |
Bot |
901740201 |
Top |
ATCAGCCCAATTAGGTCTCCACCCCTGACTCCCCTCAGCCATAGAAGGCCCCACCCCAGTCTCAGCCCTACTCCACTCAAGCACTATAGTTGTAGCAGGA[A/G]TCTTCTTACTCATCCGCTTCCACCCCCTAGCAGAAAATAGCCCACTAATCCAAACTCTAACACTATGCTTAGGCGCTATCACCACTCTGTTCGCAGCAGT |
| MitoA13264G-13273299_T_F_IFB1141660858:0 |
|
MitoA13264G |
[A/G] |
M |
Top |
901470575 |
Top |
TAACACTATGCTTAGGCGCTATCACCACTCTGTTCGCAGCAGTCTGCGCCCTTACACAAAATGACATCAAAAAAATCGTAGCCTTCTCCACTTCAAGTCA[A/G]CTAGGACTCATAATAGTTACAATCGGCATCAACCAACCACACCTAGCATTCCTGCACATCTGTACCCACGCCTTCTTCAAAGCCATACTATTTATGTGCT |
| MitoA13781G-13273301_T_F_IFB1141687043:0 |
|
MitoA13781G |
[A/G] |
M |
Top |
905910687 |
Top |
CACCCTACTAAACCCCATTAAACGCCTGGCAGCCGGAAGCCTATTCGCAGGATTTCTCATTACTAACAACATTTCCCCCGCATCCCCCTTCCAAACAACA[A/G]TCCCCCTCTACCTAAAACTCACAGCCCTCGCTGTCACTTTCCTAGGACTTCTAACAGCCCTAGACCTCAACTACCTAACCAACAAACTTAAAATAAAATC |
| MitoA14234G-13273304_T_F_IFB1141674277:0 |
|
MitoA14234G |
[A/G] |
M |
Top |
906940170 |
Top |
ACTCCTAATCACATAACCTATTCCCCCGAGCAATCTCAATTACAATATATACACCAACAAACAATGTTCAACCAGTAACCACTACTAATCAACGCCCATA[A/G]TCATACAAAGCCCCCGCACCAATAGGATCCTCCCGAATCAACCCTGACCCCTCTCCTTCATAAATTATTCAGCTTCCTACACTATTAAAGTTTACCACAA |
| MitoA14583G-13273306_T_F_IFB1141688843:0 |
|
MitoA14583G |
[A/G] |
M |
Top |
906980021 |
Top |
CATCATTCCCCCTAAATAAATTAAAAAAACTATTAAACCCATATAACCTCCCCCAAAATTCAGAATAATAACACACCCGACCACACCGCTAACAATCAGT[A/G]CTAAACCCCCATAAATAGGAGAAGGCTTAGAAGAAAACCCCACAAACCCCATTACTAAACCCACACTCAACAGAAACAAAGCATACATCATTATTCTCGC |
| MitoA14906G-13273310_B_R_IFB1141671343:0 |
|
MitoA14906G |
[T/C] |
M |
Bot |
903940438 |
Top |
ACCTCCCCACCCCATCCAACATCTCCGCATGATGAAACTTCGGCTCACTCCTTGGCGCCTGCCTGATCCTCCAAATCACCACAGGACTATTCCTAGCCAT[A/G]CACTACTCACCAGACGCCTCAACCGCCTTTTCATCAATCGCCCACATCACTCGAGACGTAAATTATGGCTGAATCATCCGCTACCTTCACGCCAATGGCG |
| MitoA15219G-13273311_T_F_IFB1141717824:0 |
|
MitoA15219G |
[A/G] |
M |
Top |
903170484 |
Top |
AGCAACAGCCTTCATAGGCTATGTCCTCCCGTGAGGCCAAATATCATTCTGAGGGGCCACAGTAATTACAAACTTACTATCCGCCATCCCATACATTGGG[A/G]CAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAGACAGTCCCACCCTCACACGATTCTTTACCTTTCACTTCATCTTACCCTTCATTATTGCAGC |
| MitoA15245G-13273312_B_R_IFB1141677374:0 |
|
MitoA15245G |
[T/C] |
M |
Bot |
906060722 |
Top |
TCCCGTGAGGCCAAATATCATTCTGAGGGGCCACAGTAATTACAAACTTACTATCCGCCATCCCATACATTGGGACAGACCTAGTTCAATGAATCTGAGG[A/G]GGCTACTCAGTAGACAGTCCCACCCTCACACGATTCTTTACCTTTCACTTCATCTTACCCTTCATTATTGCAGCCCTAGCAGCACTCCACCTCCTATTCT |
| MitoA15302G-13273313_T_F_IFB1141686491:0 |
|
MitoA15302G |
[A/G] |
M |
Top |
904490504 |
Top |
CCATCCCATACATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAGACAGTCCCACCCTCACACGATTCTTTACCTTTCACTTCATCTT[A/G]CCCTTCATTATTGCAGCCCTAGCAGCACTCCACCTCCTATTCTTGCACGAAACGGGATCAAACAACCCCCTAGGAATCACCTCCCATTCCGATAAAATCA |
| MitoA15759G-13273316_B_R_IFB1141715135:0 |
|
MitoA15759G |
[T/C] |
M |
Bot |
907550634 |
Top |
CCCCATCCTCCATATATCCAAACAACAAAGCATAATATTTCGCCCACTAAGCCAATCACTTTATTGACTCCTAGCCGCAGACCTCCTCATTCTAACCTGA[A/G]TCGGAGGACAACCAGTAAGCTACCCTTTTACCATCATTGGACAAGTAGCATCCGTACTATACTTCACAACAATCCTAATCCTAATACCAACTATCTCCCT |
| MitoA15908G-13273317_B_R_IFB1141698995:0 |
|
MitoA15908G |
[T/C] |
M |
Bot |
907210053 |
Top |
CATCCGTACTATACTTCACAACAATCCTAATCCTAATACCAACTATCTCCCTAATTGAAAACAAAATACTCAAATGGGCCTGTCCTTGTAGTATAAACTA[A/G]TACACCAGTCTTGTAAACCGGAGACGAAAACCTTTTTCCAAGGACAAATCAGAGAAAAAGTCTTTAACTCCACCATTAGCACCCAAAGCTAAGATTCTA |
| MitoA15925G-13273318_T_F_IFB1141694300:0 |
|
MitoA15925G |
[A/G] |
M |
Top |
902070458 |
Top |
ACAACAATCCTAATCCTAATACCAACTATCTCCCTAATTGAAAACAAAATACTCAAATGGGCCTGTCCTTGTAGTATAAACTAATACACCAGTCTTGTAA[A/G]CCGGAGACGAAAACCTTTTTCCAAGGACAAATCAGAGAAAAAGTCTTTAACTCCACCATTAGCACCCAAAGCTAAGATTCTAATTTAAACTATTCTCTG |
| MitoA16163G-13273319_T_F_IFB1141711520:0 |
|
MitoA16163G |
[A/G] |
M |
Top |
901030014 |
Top |
ATTGACTCACCCATCAACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT[A/G]AAAACCCAACCCACATCAAACCCCCCCCCCCCATGCTTACAAGCAAGTACAGCAATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCACC |
| MitoA16164G-13273320_T_F_IFB1141715312:0 |
|
MitoA16164G |
[A/G] |
M |
Top |
903890603 |
Top |
TTGACTCACCCATCAACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATA[A/G]AAACCCAACCCACATCAAACCCCCCCCCCCCATGCTTACAAGCAAGTACAGCAATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCACCC |
Total number of rows: 555352
Table truncated, full table size 103026 Kbytes.
| Supplementary data files not provided |
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