NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM488519 Query DataSets for GSM488519
Status Public on Sep 15, 2011
Title CHOP1159
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 2
age: 1155
shimada: 2
sex: 2
ploidy: NA
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 -0.0198235
rs10000010-124_B_F_IFB1137743663:0 0.1982469
rs10000023-124_B_F_IFB1136477253:0 -0.3163313
rs10000030-124_B_R_IFB1137703207:0 -0.0981726
rs10000041-124_T_R_IFB1138580443:0 0.0285483
rs1000007-124_T_F_IFB1135763903:0 -0.2148107
rs10000081-124_B_F_IFB1142608068:0 -0.3465735
rs10000092-124_T_R_IFB1136459723:0 0.4333636
rs10000121-124_B_R_IFB1136471760:0 -0.1147539
rs10000134-124_T_R_IFB1140474257:0 0.1410049
rs1000014-124_B_R_IFB1136184019:0 0.009909
rs10000141-124_T_F_IFB1137734411:0 -0.0253961
rs10000143-124_T_R_IFB1141671490:0 0.2743543
rs1000016-124_B_R_IFB1135100999:0 -0.5109462
rs10000160-124_T_F_IFB1139532456:0 -0.2643828
rs10000169-124_T_R_IFB1135612081:0 0.094592
rs10000185-124_B_F_IFB1138742483:0 -0.622396
rs10000201-124_T_F_IFB1139525076:0 0.2560423
rs1000022-124_B_F_IFB1135126284:0 -0.2332338
rs10000226-124_B_F_IFB1141217968:0 0.0992563

Total number of rows: 555175

Table truncated, full table size 24134 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap