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Sample GSM488524 Query DataSets for GSM488524
Status Public on Sep 15, 2011
Title CHOP1170
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 1
risk: 1
mycn: 2
age: 307
shimada: 1
sex: 2
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.03361753
rs10000010-124_B_F_IFB1137743663:0 -0.1095279
rs10000023-124_B_F_IFB1136477253:0 -0.09601692
rs10000030-124_B_R_IFB1137703207:0 -0.3071911
rs10000041-124_T_R_IFB1138580443:0 -0.2946806
rs1000007-124_T_F_IFB1135763903:0 0.06650754
rs10000081-124_B_F_IFB1142608068:0 -0.3308718
rs10000092-124_T_R_IFB1136459723:0 -0.01162498
rs10000121-124_B_R_IFB1136471760:0 -0.2169881
rs10000134-124_T_R_IFB1140474257:0 -0.0625763
rs1000014-124_B_R_IFB1136184019:0 -0.1788406
rs10000141-124_T_F_IFB1137734411:0 -0.2999719
rs10000143-124_T_R_IFB1141671490:0 -0.06634992
rs1000016-124_B_R_IFB1135100999:0 -0.0712809
rs10000160-124_T_F_IFB1139532456:0 -0.2038434
rs10000169-124_T_R_IFB1135612081:0 -0.06257481
rs10000185-124_B_F_IFB1138742483:0 -0.1914722
rs10000201-124_T_F_IFB1139525076:0 0.05071075
rs1000022-124_B_F_IFB1135126284:0 -0.170136
rs10000226-124_B_F_IFB1141217968:0 0.01826877

Total number of rows: 555175

Table truncated, full table size 24355 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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