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Sample GSM488530 Query DataSets for GSM488530
Status Public on Sep 15, 2011
Title CHOP1177
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 2
age: 709
shimada: 2
sex: 2
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 -0.0723516
rs10000010-124_B_F_IFB1137743663:0 0.3928563
rs10000023-124_B_F_IFB1136477253:0 0.40342
rs10000030-124_B_R_IFB1137703207:0 -0.097391
rs10000041-124_T_R_IFB1138580443:0 -0.2883685
rs1000007-124_T_F_IFB1135763903:0 0.1769479
rs10000081-124_B_F_IFB1142608068:0 0.0389196
rs10000092-124_T_R_IFB1136459723:0 0.4590507
rs10000121-124_B_R_IFB1136471760:0 -0.9964827
rs10000134-124_T_R_IFB1140474257:0 0.0243766
rs1000014-124_B_R_IFB1136184019:0 -0.2060982
rs10000141-124_T_F_IFB1137734411:0 0.0532417
rs10000143-124_T_R_IFB1141671490:0 0.0535586
rs1000016-124_B_R_IFB1135100999:0 0.1596148
rs10000160-124_T_F_IFB1139532456:0 -0.045921
rs10000169-124_T_R_IFB1135612081:0 0.0401614
rs10000185-124_B_F_IFB1138742483:0 -0.4358606
rs10000201-124_T_F_IFB1139525076:0 0.5156731
rs1000022-124_B_F_IFB1135126284:0 -0.7705129
rs10000226-124_B_F_IFB1141217968:0 0.0367479

Total number of rows: 555175

Table truncated, full table size 24146 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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