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Sample GSM488442 Query DataSets for GSM488442
Status Public on Sep 15, 2011
Title CHOP0879
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 1
risk: 1
mycn: 2
age: 2310
shimada: 2
sex: 1
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.1625748
rs10000010-124_B_F_IFB1137743663:0 0.1005368
rs10000023-124_B_F_IFB1136477253:0 0.0232963
rs10000030-124_B_R_IFB1137703207:0 -0.1058183
rs10000041-124_T_R_IFB1138580443:0 0.2292851
rs1000007-124_T_F_IFB1135763903:0 -0.7768092
rs10000081-124_B_F_IFB1142608068:0 -0.2133492
rs10000092-124_T_R_IFB1136459723:0 0.1692577
rs10000121-124_B_R_IFB1136471760:0 -0.2502754
rs10000134-124_T_R_IFB1140474257:0 0.2436813
rs1000014-124_B_R_IFB1136184019:0 0.0175881
rs10000141-124_T_F_IFB1137734411:0 0.3271515
rs10000143-124_T_R_IFB1141671490:0 0.2430077
rs1000016-124_B_R_IFB1135100999:0 -1.0734944
rs10000160-124_T_F_IFB1139532456:0 -0.1124245
rs10000169-124_T_R_IFB1135612081:0 0.1358475
rs10000185-124_B_F_IFB1138742483:0 -0.198562
rs10000201-124_T_F_IFB1139525076:0 0.6300055
rs1000022-124_B_F_IFB1135126284:0 -0.0084851
rs10000226-124_B_F_IFB1141217968:0 -0.067167

Total number of rows: 555175

Table truncated, full table size 24115 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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