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Sample GSM488545 Query DataSets for GSM488545
Status Public on Sep 15, 2011
Title CHOP1231
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 2
age: 487
shimada: 1
sex: 2
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.0954467
rs10000010-124_B_F_IFB1137743663:0 0.0652038
rs10000023-124_B_F_IFB1136477253:0 -0.2464659
rs10000030-124_B_R_IFB1137703207:0 -0.4759081
rs10000041-124_T_R_IFB1138580443:0 -0.4697146
rs1000007-124_T_F_IFB1135763903:0 0.1766736
rs10000081-124_B_F_IFB1142608068:0 -0.531853
rs10000092-124_T_R_IFB1136459723:0 0.1417507
rs10000121-124_B_R_IFB1136471760:0 -0.6901641
rs10000134-124_T_R_IFB1140474257:0 0.0165239
rs1000014-124_B_R_IFB1136184019:0 -0.3210268
rs10000141-124_T_F_IFB1137734411:0 -0.1998922
rs10000143-124_T_R_IFB1141671490:0 -0.0568131
rs1000016-124_B_R_IFB1135100999:0 0.2649258
rs10000160-124_T_F_IFB1139532456:0 -0.4455951
rs10000169-124_T_R_IFB1135612081:0 -0.2610856
rs10000185-124_B_F_IFB1138742483:0 -0.6016593
rs10000201-124_T_F_IFB1139525076:0 -0.0028792
rs1000022-124_B_F_IFB1135126284:0 -0.7527367
rs10000226-124_B_F_IFB1141217968:0 0.0380359

Total number of rows: 555175

Table truncated, full table size 24162 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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