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Sample GSM488403 Query DataSets for GSM488403
Status Public on Sep 15, 2011
Title CHOP0353
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 1
risk: 1
mycn: 2
age: 7
shimada: 1
sex: 1
ploidy: 1
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.1202142
rs10000010-124_B_F_IFB1137743663:0 0.179139
rs10000023-124_B_F_IFB1136477253:0 0.0125818
rs10000030-124_B_R_IFB1137703207:0 -0.0610825
rs10000041-124_T_R_IFB1138580443:0 0.7484382
rs1000007-124_T_F_IFB1135763903:0 -0.2005441
rs10000081-124_B_F_IFB1142608068:0 -0.0772785
rs10000092-124_T_R_IFB1136459723:0 -0.1675684
rs10000121-124_B_R_IFB1136471760:0 -0.203793
rs10000134-124_T_R_IFB1140474257:0 0.0792859
rs1000014-124_B_R_IFB1136184019:0 0.0025001
rs10000141-124_T_F_IFB1137734411:0 0.1913551
rs10000143-124_T_R_IFB1141671490:0 0.1846203
rs1000016-124_B_R_IFB1135100999:0 -0.0807812
rs10000160-124_T_F_IFB1139532456:0 -0.2252571
rs10000169-124_T_R_IFB1135612081:0 0.0898704
rs10000185-124_B_F_IFB1138742483:0 0.186958
rs10000201-124_T_F_IFB1139525076:0 0.2150798
rs1000022-124_B_F_IFB1135126284:0 0.0415003
rs10000226-124_B_F_IFB1141217968:0 0.1381371

Total number of rows: 555175

Table truncated, full table size 24124 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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