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Sample GSM488364 Query DataSets for GSM488364
Status Public on Sep 15, 2011
Title CHOP0141
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 4
risk: 2
mycn: 2
age: 308
shimada: 1
sex: 2
ploidy: 1
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 -0.1290168
rs10000010-124_B_F_IFB1137743663:0 -0.1159569
rs10000023-124_B_F_IFB1136477253:0 -0.2077746
rs10000030-124_B_R_IFB1137703207:0 -0.3035136
rs10000041-124_T_R_IFB1138580443:0 0.5863299
rs1000007-124_T_F_IFB1135763903:0 -0.1959232
rs10000081-124_B_F_IFB1142608068:0 -0.6401247
rs10000092-124_T_R_IFB1136459723:0 -0.1565804
rs10000121-124_B_R_IFB1136471760:0 -0.5704895
rs10000134-124_T_R_IFB1140474257:0 0.0078116
rs1000014-124_B_R_IFB1136184019:0 -0.2162206
rs10000141-124_T_F_IFB1137734411:0 -0.1490646
rs10000143-124_T_R_IFB1141671490:0 -0.0144623
rs1000016-124_B_R_IFB1135100999:0 -0.3052022
rs10000160-124_T_F_IFB1139532456:0 -0.2892777
rs10000169-124_T_R_IFB1135612081:0 -0.2258029
rs10000185-124_B_F_IFB1138742483:0 -0.221836
rs10000201-124_T_F_IFB1139525076:0 -0.0413397
rs1000022-124_B_F_IFB1135126284:0 -0.2509676
rs10000226-124_B_F_IFB1141217968:0 0.050574

Total number of rows: 555175

Table truncated, full table size 24139 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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