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Sample GSM488436 Query DataSets for GSM488436
Status Public on Sep 15, 2011
Title CHOP0493
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 1
age: 1500
shimada: 2
sex: 2
ploidy: 1
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.1435741
rs10000010-124_B_F_IFB1137743663:0 0.06584041
rs10000023-124_B_F_IFB1136477253:0 0.04220378
rs10000030-124_B_R_IFB1137703207:0 -0.3289398
rs10000041-124_T_R_IFB1138580443:0 -0.1711437
rs1000007-124_T_F_IFB1135763903:0 -0.08098778
rs10000081-124_B_F_IFB1142608068:0 -0.2787936
rs10000092-124_T_R_IFB1136459723:0 0.03186437
rs10000121-124_B_R_IFB1136471760:0 -0.5219741
rs10000134-124_T_R_IFB1140474257:0 -0.02045741
rs1000014-124_B_R_IFB1136184019:0 -0.1525985
rs10000141-124_T_F_IFB1137734411:0 -0.2588027
rs10000143-124_T_R_IFB1141671490:0 -0.01538131
rs1000016-124_B_R_IFB1135100999:0 -0.2645591
rs10000160-124_T_F_IFB1139532456:0 -0.09128431
rs10000169-124_T_R_IFB1135612081:0 0.02398685
rs10000185-124_B_F_IFB1138742483:0 0.1230336
rs10000201-124_T_F_IFB1139525076:0 0.1189307
rs1000022-124_B_F_IFB1135126284:0 -0.3608692
rs10000226-124_B_F_IFB1141217968:0 0.141292

Total number of rows: 555175

Table truncated, full table size 24364 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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