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Sample GSM488469 Query DataSets for GSM488469
Status Public on Sep 15, 2011
Title CHOP0989
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 1
risk: 1
mycn: 2
age: 70
shimada: 1
sex: 1
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.3722311
rs10000010-124_B_F_IFB1137743663:0 -0.01208383
rs10000023-124_B_F_IFB1136477253:0 -0.4203826
rs10000030-124_B_R_IFB1137703207:0 -0.1525474
rs10000041-124_T_R_IFB1138580443:0 -0.3637219
rs1000007-124_T_F_IFB1135763903:0 -0.006720305
rs10000081-124_B_F_IFB1142608068:0 -0.6235282
rs10000092-124_T_R_IFB1136459723:0 -0.06286423
rs10000121-124_B_R_IFB1136471760:0 -0.07851561
rs10000134-124_T_R_IFB1140474257:0 0.06314185
rs1000014-124_B_R_IFB1136184019:0 -0.5898454
rs10000141-124_T_F_IFB1137734411:0 0.0151394
rs10000143-124_T_R_IFB1141671490:0 0.1111193
rs1000016-124_B_R_IFB1135100999:0 -0.1457149
rs10000160-124_T_F_IFB1139532456:0 -0.02565252
rs10000169-124_T_R_IFB1135612081:0 -0.1479827
rs10000185-124_B_F_IFB1138742483:0 -0.6354432
rs10000201-124_T_F_IFB1139525076:0 0.0987213
rs1000022-124_B_F_IFB1135126284:0 -0.104877
rs10000226-124_B_F_IFB1141217968:0 0.03784215

Total number of rows: 555175

Table truncated, full table size 24334 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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