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Sample GSM488439 Query DataSets for GSM488439
Status Public on Sep 15, 2011
Title CHOP0502
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 3
risk: 1
mycn: 2
age: 243
shimada: 1
sex: 2
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.0918352
rs10000010-124_B_F_IFB1137743663:0 -0.555641
rs10000023-124_B_F_IFB1136477253:0 -0.0299198
rs10000030-124_B_R_IFB1137703207:0 -0.7454059
rs10000041-124_T_R_IFB1138580443:0 -0.3668971
rs1000007-124_T_F_IFB1135763903:0 -0.1095567
rs10000081-124_B_F_IFB1142608068:0 -0.4013261
rs10000092-124_T_R_IFB1136459723:0 -0.3321221
rs10000121-124_B_R_IFB1136471760:0 -0.5085355
rs10000134-124_T_R_IFB1140474257:0 0.0421843
rs1000014-124_B_R_IFB1136184019:0 -0.0968763
rs10000141-124_T_F_IFB1137734411:0 -0.1772912
rs10000143-124_T_R_IFB1141671490:0 0.0235529
rs1000016-124_B_R_IFB1135100999:0 -0.3193973
rs10000160-124_T_F_IFB1139532456:0 -0.1418693
rs10000169-124_T_R_IFB1135612081:0 -0.2598673
rs10000185-124_B_F_IFB1138742483:0 -0.2980117
rs10000201-124_T_F_IFB1139525076:0 0.0983601
rs1000022-124_B_F_IFB1135126284:0 0.1960501
rs10000226-124_B_F_IFB1141217968:0 -0.00527

Total number of rows: 555175

Table truncated, full table size 24148 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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