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Sample GSM488370 Query DataSets for GSM488370
Status Public on Sep 15, 2011
Title CHOP0192
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 1
age: 687
shimada: 2
sex: 1
ploidy: NA
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 -0.1523111
rs10000010-124_B_F_IFB1137743663:0 0.2126637
rs10000023-124_B_F_IFB1136477253:0 0.0531913
rs10000030-124_B_R_IFB1137703207:0 -0.2696905
rs10000041-124_T_R_IFB1138580443:0 0.2396924
rs1000007-124_T_F_IFB1135763903:0 -0.1206906
rs10000081-124_B_F_IFB1142608068:0 -0.5725186
rs10000092-124_T_R_IFB1136459723:0 0.2153842
rs10000121-124_B_R_IFB1136471760:0 -0.2642203
rs10000134-124_T_R_IFB1140474257:0 -0.0795392
rs1000014-124_B_R_IFB1136184019:0 0.0992229
rs10000141-124_T_F_IFB1137734411:0 -0.02856
rs10000143-124_T_R_IFB1141671490:0 0.0316652
rs1000016-124_B_R_IFB1135100999:0 -0.351752
rs10000160-124_T_F_IFB1139532456:0 -0.1467038
rs10000169-124_T_R_IFB1135612081:0 -0.0374174
rs10000185-124_B_F_IFB1138742483:0 -0.5468117
rs10000201-124_T_F_IFB1139525076:0 0.1753617
rs1000022-124_B_F_IFB1135126284:0 0.1934656
rs10000226-124_B_F_IFB1141217968:0 -0.0697014

Total number of rows: 555175

Table truncated, full table size 24131 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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