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Sample GSM488540 Query DataSets for GSM488540
Status Public on Sep 15, 2011
Title CHOP1210
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 2
age: 1002
shimada: 2
sex: 1
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.3166449
rs10000010-124_B_F_IFB1137743663:0 -0.3789726
rs10000023-124_B_F_IFB1136477253:0 0.1078662
rs10000030-124_B_R_IFB1137703207:0 -0.3355644
rs10000041-124_T_R_IFB1138580443:0 0.1751639
rs1000007-124_T_F_IFB1135763903:0 -0.1099564
rs10000081-124_B_F_IFB1142608068:0 -0.3660541
rs10000092-124_T_R_IFB1136459723:0 -0.2318073
rs10000121-124_B_R_IFB1136471760:0 -0.3539119
rs10000134-124_T_R_IFB1140474257:0 0.2189213
rs1000014-124_B_R_IFB1136184019:0 -0.1445569
rs10000141-124_T_F_IFB1137734411:0 -0.2598919
rs10000143-124_T_R_IFB1141671490:0 -0.0001922
rs1000016-124_B_R_IFB1135100999:0 -0.1974952
rs10000160-124_T_F_IFB1139532456:0 -0.1258889
rs10000169-124_T_R_IFB1135612081:0 -0.1785196
rs10000185-124_B_F_IFB1138742483:0 -0.7829903
rs10000201-124_T_F_IFB1139525076:0 -0.2631891
rs1000022-124_B_F_IFB1135126284:0 -0.3630392
rs10000226-124_B_F_IFB1141217968:0 0.0698215

Total number of rows: 555175

Table truncated, full table size 24150 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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