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Sample GSM488495 Query DataSets for GSM488495
Status Public on Sep 15, 2011
Title CHOP1089
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 1
age: 956
shimada: 2
sex: 2
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.0801147
rs10000010-124_B_F_IFB1137743663:0 0.1268274
rs10000023-124_B_F_IFB1136477253:0 0.1513084
rs10000030-124_B_R_IFB1137703207:0 0.0742348
rs10000041-124_T_R_IFB1138580443:0 -0.1678117
rs1000007-124_T_F_IFB1135763903:0 0.078196
rs10000081-124_B_F_IFB1142608068:0 -0.6279742
rs10000092-124_T_R_IFB1136459723:0 0.1494931
rs10000121-124_B_R_IFB1136471760:0 -0.3224977
rs10000134-124_T_R_IFB1140474257:0 0.1691776
rs1000014-124_B_R_IFB1136184019:0 -0.5901198
rs10000141-124_T_F_IFB1137734411:0 0.3597827
rs10000143-124_T_R_IFB1141671490:0 0.4946754
rs1000016-124_B_R_IFB1135100999:0 -0.1703947
rs10000160-124_T_F_IFB1139532456:0 -0.1053987
rs10000169-124_T_R_IFB1135612081:0 0.3619209
rs10000185-124_B_F_IFB1138742483:0 -0.0626996
rs10000201-124_T_F_IFB1139525076:0 0.5476743
rs1000022-124_B_F_IFB1135126284:0 -0.5935259
rs10000226-124_B_F_IFB1141217968:0 0.3466256

Total number of rows: 555175

Table truncated, full table size 24129 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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