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Sample GSM488443 Query DataSets for GSM488443
Status Public on Sep 15, 2011
Title CHOP0907
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 2
mycn: 2
age: 217
shimada: 1
sex: 1
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 -0.0288008
rs10000010-124_B_F_IFB1137743663:0 -0.1619286
rs10000023-124_B_F_IFB1136477253:0 0.2225462
rs10000030-124_B_R_IFB1137703207:0 -0.4550409
rs10000041-124_T_R_IFB1138580443:0 0.4827469
rs1000007-124_T_F_IFB1135763903:0 -0.1891977
rs10000081-124_B_F_IFB1142608068:0 -0.3238573
rs10000092-124_T_R_IFB1136459723:0 -0.1244172
rs10000121-124_B_R_IFB1136471760:0 -0.612147
rs10000134-124_T_R_IFB1140474257:0 -0.1321577
rs1000014-124_B_R_IFB1136184019:0 0.07249
rs10000141-124_T_F_IFB1137734411:0 0.072007
rs10000143-124_T_R_IFB1141671490:0 0.11927
rs1000016-124_B_R_IFB1135100999:0 -0.4730265
rs10000160-124_T_F_IFB1139532456:0 -0.0311432
rs10000169-124_T_R_IFB1135612081:0 -0.1487304
rs10000185-124_B_F_IFB1138742483:0 -0.3277335
rs10000201-124_T_F_IFB1139525076:0 0.1534174
rs1000022-124_B_F_IFB1135126284:0 -0.1029361
rs10000226-124_B_F_IFB1141217968:0 0.1234446

Total number of rows: 555175

Table truncated, full table size 24162 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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