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Sample GSM488411 Query DataSets for GSM488411
Status Public on Sep 15, 2011
Title CHOP0401
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 1
risk: 1
mycn: 2
age: 392
shimada: 1
sex: 2
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 -0.1458028
rs10000010-124_B_F_IFB1137743663:0 -0.09424216
rs10000023-124_B_F_IFB1136477253:0 -0.2598029
rs10000030-124_B_R_IFB1137703207:0 -0.2550157
rs10000041-124_T_R_IFB1138580443:0 -0.2833618
rs1000007-124_T_F_IFB1135763903:0 -0.1308851
rs10000081-124_B_F_IFB1142608068:0 -0.4363602
rs10000092-124_T_R_IFB1136459723:0 -0.02637769
rs10000121-124_B_R_IFB1136471760:0 -0.4136281
rs10000134-124_T_R_IFB1140474257:0 -0.1580337
rs1000014-124_B_R_IFB1136184019:0 -0.2313598
rs10000141-124_T_F_IFB1137734411:0 -0.2153633
rs10000143-124_T_R_IFB1141671490:0 -0.1195208
rs1000016-124_B_R_IFB1135100999:0 -0.1425743
rs10000160-124_T_F_IFB1139532456:0 -0.3213095
rs10000169-124_T_R_IFB1135612081:0 -0.1635717
rs10000185-124_B_F_IFB1138742483:0 -0.4476391
rs10000201-124_T_F_IFB1139525076:0 -0.09203418
rs1000022-124_B_F_IFB1135126284:0 0.2433162
rs10000226-124_B_F_IFB1141217968:0 -0.0952483

Total number of rows: 555175

Table truncated, full table size 24343 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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