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Sample GSM488376 Query DataSets for GSM488376
Status Public on Sep 15, 2011
Title CHOP0222
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 2
age: 1098
shimada: 2
sex: 1
ploidy: NA
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.0784637
rs10000010-124_B_F_IFB1137743663:0 0.3077307
rs10000023-124_B_F_IFB1136477253:0 -0.0416893
rs10000030-124_B_R_IFB1137703207:0 0.1648666
rs10000041-124_T_R_IFB1138580443:0 -0.6249371
rs1000007-124_T_F_IFB1135763903:0 -0.3552662
rs10000081-124_B_F_IFB1142608068:0 -0.3089799
rs10000092-124_T_R_IFB1136459723:0 0.094473
rs10000121-124_B_R_IFB1136471760:0 0.0595093
rs10000134-124_T_R_IFB1140474257:0 0.0381661
rs1000014-124_B_R_IFB1136184019:0 0.0249449
rs10000141-124_T_F_IFB1137734411:0 -0.0099544
rs10000143-124_T_R_IFB1141671490:0 0.197565
rs1000016-124_B_R_IFB1135100999:0 -0.0691333
rs10000160-124_T_F_IFB1139532456:0 -0.5081176
rs10000169-124_T_R_IFB1135612081:0 0.2354838
rs10000185-124_B_F_IFB1138742483:0 -0.1151649
rs10000201-124_T_F_IFB1139525076:0 0.3828967
rs1000022-124_B_F_IFB1135126284:0 -0.2921958
rs10000226-124_B_F_IFB1141217968:0 0.1903458

Total number of rows: 555175

Table truncated, full table size 24133 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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