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Sample GSM488392 Query DataSets for GSM488392
Status Public on Sep 15, 2011
Title CHOP0298
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 3
risk: 1
mycn: 2
age: 170
shimada: 1
sex: 2
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.1827256
rs10000010-124_B_F_IFB1137743663:0 -0.5001999
rs10000023-124_B_F_IFB1136477253:0 -0.1634875
rs10000030-124_B_R_IFB1137703207:0 -0.2858912
rs10000041-124_T_R_IFB1138580443:0 -0.2972995
rs1000007-124_T_F_IFB1135763903:0 0.0199928
rs10000081-124_B_F_IFB1142608068:0 -0.6828346
rs10000092-124_T_R_IFB1136459723:0 -0.4056498
rs10000121-124_B_R_IFB1136471760:0 -0.2192138
rs10000134-124_T_R_IFB1140474257:0 -0.1399076
rs1000014-124_B_R_IFB1136184019:0 -0.0047079
rs10000141-124_T_F_IFB1137734411:0 -0.0122098
rs10000143-124_T_R_IFB1141671490:0 -0.2285692
rs1000016-124_B_R_IFB1135100999:0 0.1116541
rs10000160-124_T_F_IFB1139532456:0 -0.1303407
rs10000169-124_T_R_IFB1135612081:0 -0.3200447
rs10000185-124_B_F_IFB1138742483:0 -0.1625831
rs10000201-124_T_F_IFB1139525076:0 -0.0269181
rs1000022-124_B_F_IFB1135126284:0 -0.4641824
rs10000226-124_B_F_IFB1141217968:0 -0.3542667

Total number of rows: 555175

Table truncated, full table size 24161 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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