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Sample GSM488348 Query DataSets for GSM488348
Status Public on Sep 15, 2011
Title CHOP0058
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 2
age: 723
shimada: 2
sex: 1
ploidy: NA
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.2083433
rs10000010-124_B_F_IFB1137743663:0 -0.01883963
rs10000023-124_B_F_IFB1136477253:0 0.1986552
rs10000030-124_B_R_IFB1137703207:0 -0.2855292
rs10000041-124_T_R_IFB1138580443:0 0.4149415
rs1000007-124_T_F_IFB1135763903:0 -0.2014875
rs10000081-124_B_F_IFB1142608068:0 -0.2977688
rs10000092-124_T_R_IFB1136459723:0 0.007733056
rs10000121-124_B_R_IFB1136471760:0 -0.3327652
rs10000134-124_T_R_IFB1140474257:0 -0.07410793
rs1000014-124_B_R_IFB1136184019:0 -0.1593402
rs10000141-124_T_F_IFB1137734411:0 0.1054352
rs10000143-124_T_R_IFB1141671490:0 0.1537243
rs1000016-124_B_R_IFB1135100999:0 -0.2364477
rs10000160-124_T_F_IFB1139532456:0 -0.1700206
rs10000169-124_T_R_IFB1135612081:0 0.08624237
rs10000185-124_B_F_IFB1138742483:0 -0.1196442
rs10000201-124_T_F_IFB1139525076:0 0.170009
rs1000022-124_B_F_IFB1135126284:0 -0.06328581
rs10000226-124_B_F_IFB1141217968:0 0.07198028

Total number of rows: 555175

Table truncated, full table size 24361 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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