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Sample GSM488367 Query DataSets for GSM488367
Status Public on Sep 15, 2011
Title CHOP0157
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 3
risk: 3
mycn: 1
age: 5342
shimada: 2
sex: 2
ploidy: 1
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 -0.0353068
rs10000010-124_B_F_IFB1137743663:0 0.2096315
rs10000023-124_B_F_IFB1136477253:0 -0.0152297
rs10000030-124_B_R_IFB1137703207:0 -0.3060068
rs10000041-124_T_R_IFB1138580443:0 0.3240026
rs1000007-124_T_F_IFB1135763903:0 0.1592644
rs10000081-124_B_F_IFB1142608068:0 -0.2242632
rs10000092-124_T_R_IFB1136459723:0 0.2325164
rs10000121-124_B_R_IFB1136471760:0 -0.1850286
rs10000134-124_T_R_IFB1140474257:0 0.0809963
rs1000014-124_B_R_IFB1136184019:0 0.0590437
rs10000141-124_T_F_IFB1137734411:0 0.1299672
rs10000143-124_T_R_IFB1141671490:0 -0.0616581
rs1000016-124_B_R_IFB1135100999:0 -0.0678561
rs10000160-124_T_F_IFB1139532456:0 -0.1733024
rs10000169-124_T_R_IFB1135612081:0 0.1231024
rs10000185-124_B_F_IFB1138742483:0 -0.1890159
rs10000201-124_T_F_IFB1139525076:0 0.1784831
rs1000022-124_B_F_IFB1135126284:0 0.0619124
rs10000226-124_B_F_IFB1141217968:0 0.0584525

Total number of rows: 555175

Table truncated, full table size 24142 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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