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Sample GSM488424 Query DataSets for GSM488424
Status Public on Sep 15, 2011
Title CHOP0445
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 4
age: 1285
shimada: 2
sex: 1
ploidy: 1
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.1502916
rs10000010-124_B_F_IFB1137743663:0 -0.0593865
rs10000023-124_B_F_IFB1136477253:0 0.1345468
rs10000030-124_B_R_IFB1137703207:0 -0.4218346
rs10000041-124_T_R_IFB1138580443:0 -0.026961
rs1000007-124_T_F_IFB1135763903:0 0.0293733
rs10000081-124_B_F_IFB1142608068:0 -0.3336889
rs10000092-124_T_R_IFB1136459723:0 -0.2551475
rs10000121-124_B_R_IFB1136471760:0 -0.4797778
rs10000134-124_T_R_IFB1140474257:0 -0.0582025
rs1000014-124_B_R_IFB1136184019:0 -0.0500342
rs10000141-124_T_F_IFB1137734411:0 -0.1212746
rs10000143-124_T_R_IFB1141671490:0 0.1848567
rs1000016-124_B_R_IFB1135100999:0 -0.0292059
rs10000160-124_T_F_IFB1139532456:0 -0.0990988
rs10000169-124_T_R_IFB1135612081:0 -0.0820659
rs10000185-124_B_F_IFB1138742483:0 -0.2141576
rs10000201-124_T_F_IFB1139525076:0 0.1232163
rs1000022-124_B_F_IFB1135126284:0 -0.1190524
rs10000226-124_B_F_IFB1141217968:0 -0.0215253

Total number of rows: 555175

Table truncated, full table size 24146 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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