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Sample GSM488486 Query DataSets for GSM488486
Status Public on Sep 15, 2011
Title CHOP1060
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 1
risk: 1
mycn: 2
age: 1112
shimada: 2
sex: 2
ploidy: 1
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.1285005
rs10000010-124_B_F_IFB1137743663:0 -0.2073611
rs10000023-124_B_F_IFB1136477253:0 0.012669
rs10000030-124_B_R_IFB1137703207:0 -0.3710106
rs10000041-124_T_R_IFB1138580443:0 0.5500024
rs1000007-124_T_F_IFB1135763903:0 -0.2268725
rs10000081-124_B_F_IFB1142608068:0 -0.3830016
rs10000092-124_T_R_IFB1136459723:0 0.044763
rs10000121-124_B_R_IFB1136471760:0 -0.675391
rs10000134-124_T_R_IFB1140474257:0 0.1994621
rs1000014-124_B_R_IFB1136184019:0 0.3872435
rs10000141-124_T_F_IFB1137734411:0 0.3398627
rs10000143-124_T_R_IFB1141671490:0 0.203833
rs1000016-124_B_R_IFB1135100999:0 -0.5523872
rs10000160-124_T_F_IFB1139532456:0 -0.0524089
rs10000169-124_T_R_IFB1135612081:0 0.1245419
rs10000185-124_B_F_IFB1138742483:0 -0.5149127
rs10000201-124_T_F_IFB1139525076:0 0.3092695
rs1000022-124_B_F_IFB1135126284:0 -0.3728972
rs10000226-124_B_F_IFB1141217968:0 -0.0448559

Total number of rows: 555175

Table truncated, full table size 24159 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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