NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM488398 Query DataSets for GSM488398
Status Public on Sep 15, 2011
Title CHOP0333
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 6
risk: 1
mycn: 2
age: 245
shimada: 1
sex: 1
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.1920855
rs10000010-124_B_F_IFB1137743663:0 -0.0847635
rs10000023-124_B_F_IFB1136477253:0 0.06079
rs10000030-124_B_R_IFB1137703207:0 -0.0700952
rs10000041-124_T_R_IFB1138580443:0 0.3014037
rs1000007-124_T_F_IFB1135763903:0 -0.0198969
rs10000081-124_B_F_IFB1142608068:0 0.0050343
rs10000092-124_T_R_IFB1136459723:0 -0.3045646
rs10000121-124_B_R_IFB1136471760:0 -0.1717186
rs10000134-124_T_R_IFB1140474257:0 0.1161361
rs1000014-124_B_R_IFB1136184019:0 -0.0105704
rs10000141-124_T_F_IFB1137734411:0 -0.0284264
rs10000143-124_T_R_IFB1141671490:0 -0.031603
rs1000016-124_B_R_IFB1135100999:0 -0.1698976
rs10000160-124_T_F_IFB1139532456:0 -0.1787233
rs10000169-124_T_R_IFB1135612081:0 -0.3186811
rs10000185-124_B_F_IFB1138742483:0 -0.0864578
rs10000201-124_T_F_IFB1139525076:0 0.2666307
rs1000022-124_B_F_IFB1135126284:0 0.0787451
rs10000226-124_B_F_IFB1141217968:0 0.0062682

Total number of rows: 555175

Table truncated, full table size 24148 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap