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Sample GSM488453 Query DataSets for GSM488453
Status Public on Sep 15, 2011
Title CHOP0532
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 4
risk: 3
mycn: 1
age: 1873
shimada: 2
sex: 1
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.1511422
rs10000010-124_B_F_IFB1137743663:0 -0.3383261
rs10000023-124_B_F_IFB1136477253:0 -0.0395933
rs10000030-124_B_R_IFB1137703207:0 -0.537843
rs10000041-124_T_R_IFB1138580443:0 0.2812325
rs1000007-124_T_F_IFB1135763903:0 -0.0506773
rs10000081-124_B_F_IFB1142608068:0 -0.2669694
rs10000092-124_T_R_IFB1136459723:0 0.2182329
rs10000121-124_B_R_IFB1136471760:0 -0.8968684
rs10000134-124_T_R_IFB1140474257:0 0.1422082
rs1000014-124_B_R_IFB1136184019:0 0.3517312
rs10000141-124_T_F_IFB1137734411:0 0.0420011
rs10000143-124_T_R_IFB1141671490:0 0.0074524
rs1000016-124_B_R_IFB1135100999:0 0.0569106
rs10000160-124_T_F_IFB1139532456:0 -0.1488118
rs10000169-124_T_R_IFB1135612081:0 -0.181324
rs10000185-124_B_F_IFB1138742483:0 -0.3533187
rs10000201-124_T_F_IFB1139525076:0 0.0678875
rs1000022-124_B_F_IFB1135126284:0 -0.0128513
rs10000226-124_B_F_IFB1141217968:0 0.2629909

Total number of rows: 555175

Table truncated, full table size 24173 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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