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Sample GSM488497 Query DataSets for GSM488497
Status Public on Sep 15, 2011
Title CHOP1096
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 4
risk: 3
mycn: 2
age: 706
shimada: 2
sex: 1
ploidy: 1
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 -0.0361774
rs10000010-124_B_F_IFB1137743663:0 -0.0292615
rs10000023-124_B_F_IFB1136477253:0 -0.3856945
rs10000030-124_B_R_IFB1137703207:0 -0.6326002
rs10000041-124_T_R_IFB1138580443:0 -0.6563801
rs1000007-124_T_F_IFB1135763903:0 -0.1343566
rs10000081-124_B_F_IFB1142608068:0 -0.7117203
rs10000092-124_T_R_IFB1136459723:0 -0.2623313
rs10000121-124_B_R_IFB1136471760:0 -0.5752568
rs10000134-124_T_R_IFB1140474257:0 -0.0522113
rs1000014-124_B_R_IFB1136184019:0 -0.0069259
rs10000141-124_T_F_IFB1137734411:0 -0.1930121
rs10000143-124_T_R_IFB1141671490:0 -0.0315993
rs1000016-124_B_R_IFB1135100999:0 -0.373653
rs10000160-124_T_F_IFB1139532456:0 -0.5111714
rs10000169-124_T_R_IFB1135612081:0 -0.3662593
rs10000185-124_B_F_IFB1138742483:0 -0.4037426
rs10000201-124_T_F_IFB1139525076:0 0.1054827
rs1000022-124_B_F_IFB1135126284:0 0.0112635
rs10000226-124_B_F_IFB1141217968:0 0.0721453

Total number of rows: 555175

Table truncated, full table size 24130 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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