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Sample GSM488433 Query DataSets for GSM488433
Status Public on Sep 15, 2011
Title CHOP0489
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 3
risk: 1
mycn: 2
age: 537
shimada: 1
sex: 1
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.0886146
rs10000010-124_B_F_IFB1137743663:0 0.0832834
rs10000023-124_B_F_IFB1136477253:0 -0.0460887
rs10000030-124_B_R_IFB1137703207:0 -0.1227235
rs10000041-124_T_R_IFB1138580443:0 0.5104821
rs1000007-124_T_F_IFB1135763903:0 0.2401629
rs10000081-124_B_F_IFB1142608068:0 -0.2103475
rs10000092-124_T_R_IFB1136459723:0 0.0398577
rs10000121-124_B_R_IFB1136471760:0 -0.6507304
rs10000134-124_T_R_IFB1140474257:0 0.0493399
rs1000014-124_B_R_IFB1136184019:0 -0.203837
rs10000141-124_T_F_IFB1137734411:0 0.1320629
rs10000143-124_T_R_IFB1141671490:0 0.1127345
rs1000016-124_B_R_IFB1135100999:0 -0.1355752
rs10000160-124_T_F_IFB1139532456:0 -0.1737908
rs10000169-124_T_R_IFB1135612081:0 0.0557287
rs10000185-124_B_F_IFB1138742483:0 -0.36518
rs10000201-124_T_F_IFB1139525076:0 0.1896162
rs1000022-124_B_F_IFB1135126284:0 -0.2615706
rs10000226-124_B_F_IFB1141217968:0 0.0068669

Total number of rows: 555175

Table truncated, full table size 24147 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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