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Sample GSM488430 Query DataSets for GSM488430
Status Public on Sep 15, 2011
Title CHOP0482
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 4
risk: 3
mycn: 2
age: 563
shimada: 2
sex: 1
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 -0.1154355
rs10000010-124_B_F_IFB1137743663:0 0.18334
rs10000023-124_B_F_IFB1136477253:0 -0.2119087
rs10000030-124_B_R_IFB1137703207:0 -0.1501855
rs10000041-124_T_R_IFB1138580443:0 -0.1766527
rs1000007-124_T_F_IFB1135763903:0 -0.2872614
rs10000081-124_B_F_IFB1142608068:0 -0.4937521
rs10000092-124_T_R_IFB1136459723:0 0.2275838
rs10000121-124_B_R_IFB1136471760:0 -0.5588244
rs10000134-124_T_R_IFB1140474257:0 0.0559025
rs1000014-124_B_R_IFB1136184019:0 -0.0638971
rs10000141-124_T_F_IFB1137734411:0 0.0061192
rs10000143-124_T_R_IFB1141671490:0 0.2079631
rs1000016-124_B_R_IFB1135100999:0 -0.287831
rs10000160-124_T_F_IFB1139532456:0 -0.2988123
rs10000169-124_T_R_IFB1135612081:0 0.1094634
rs10000185-124_B_F_IFB1138742483:0 -0.5523302
rs10000201-124_T_F_IFB1139525076:0 0.3133241
rs1000022-124_B_F_IFB1135126284:0 0.1607639
rs10000226-124_B_F_IFB1141217968:0 0.0296463

Total number of rows: 555175

Table truncated, full table size 24136 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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