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Sample GSM488357 Query DataSets for GSM488357
Status Public on Sep 15, 2011
Title CHOP0091
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 3
risk: 1
mycn: 2
age: 1790
shimada: 2
sex: 2
ploidy: 1
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.1900697
rs10000010-124_B_F_IFB1137743663:0 -0.3800883
rs10000023-124_B_F_IFB1136477253:0 0.0168634
rs10000030-124_B_R_IFB1137703207:0 -0.1201414
rs10000041-124_T_R_IFB1138580443:0 0.1398513
rs1000007-124_T_F_IFB1135763903:0 -0.2848989
rs10000081-124_B_F_IFB1142608068:0 -0.0962016
rs10000092-124_T_R_IFB1136459723:0 -0.0260935
rs10000121-124_B_R_IFB1136471760:0 -0.1152043
rs10000134-124_T_R_IFB1140474257:0 0.0281437
rs1000014-124_B_R_IFB1136184019:0 -0.0618568
rs10000141-124_T_F_IFB1137734411:0 0.049485
rs10000143-124_T_R_IFB1141671490:0 -0.0267959
rs1000016-124_B_R_IFB1135100999:0 -0.2076996
rs10000160-124_T_F_IFB1139532456:0 -0.1663833
rs10000169-124_T_R_IFB1135612081:0 -0.0445349
rs10000185-124_B_F_IFB1138742483:0 -0.1286884
rs10000201-124_T_F_IFB1139525076:0 -0.1102594
rs1000022-124_B_F_IFB1135126284:0 0.2443208
rs10000226-124_B_F_IFB1141217968:0 -0.0728015

Total number of rows: 555175

Table truncated, full table size 24155 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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