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Sample GSM488511 Query DataSets for GSM488511
Status Public on Sep 15, 2011
Title CHOP1133
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 4
risk: 2
mycn: 2
age: 510
shimada: 1
sex: 1
ploidy: 1
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 -0.04027779
rs10000010-124_B_F_IFB1137743663:0 0.00868179
rs10000023-124_B_F_IFB1136477253:0 -0.07349214
rs10000030-124_B_R_IFB1137703207:0 -0.3500579
rs10000041-124_T_R_IFB1138580443:0 0.1453748
rs1000007-124_T_F_IFB1135763903:0 -0.2645608
rs10000081-124_B_F_IFB1142608068:0 -0.3186691
rs10000092-124_T_R_IFB1136459723:0 0.02531153
rs10000121-124_B_R_IFB1136471760:0 -0.4304448
rs10000134-124_T_R_IFB1140474257:0 0.06566648
rs1000014-124_B_R_IFB1136184019:0 -0.05986757
rs10000141-124_T_F_IFB1137734411:0 -0.1753742
rs10000143-124_T_R_IFB1141671490:0 0.04284821
rs1000016-124_B_R_IFB1135100999:0 -0.3199496
rs10000160-124_T_F_IFB1139532456:0 -0.08801579
rs10000169-124_T_R_IFB1135612081:0 0.1657993
rs10000185-124_B_F_IFB1138742483:0 0.0003842602
rs10000201-124_T_F_IFB1139525076:0 0.1057746
rs1000022-124_B_F_IFB1135126284:0 0.08029179
rs10000226-124_B_F_IFB1141217968:0 0.02358563

Total number of rows: 555175

Table truncated, full table size 24397 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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