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Sample GSM488396 Query DataSets for GSM488396
Status Public on Sep 15, 2011
Title CHOP0317
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 2
age: 3969
shimada: 2
sex: 2
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.2996281
rs10000010-124_B_F_IFB1137743663:0 0.0453594
rs10000023-124_B_F_IFB1136477253:0 0.3414679
rs10000030-124_B_R_IFB1137703207:0 -0.1442914
rs10000041-124_T_R_IFB1138580443:0 0.0851144
rs1000007-124_T_F_IFB1135763903:0 -0.2921338
rs10000081-124_B_F_IFB1142608068:0 -0.3169845
rs10000092-124_T_R_IFB1136459723:0 0.2874796
rs10000121-124_B_R_IFB1136471760:0 -0.4588375
rs10000134-124_T_R_IFB1140474257:0 0.3795564
rs1000014-124_B_R_IFB1136184019:0 0.1959743
rs10000141-124_T_F_IFB1137734411:0 0.189394
rs10000143-124_T_R_IFB1141671490:0 0.2467497
rs1000016-124_B_R_IFB1135100999:0 -0.3897028
rs10000160-124_T_F_IFB1139532456:0 0.0113285
rs10000169-124_T_R_IFB1135612081:0 -0.0324097
rs10000185-124_B_F_IFB1138742483:0 -0.4533971
rs10000201-124_T_F_IFB1139525076:0 0.3764423
rs1000022-124_B_F_IFB1135126284:0 -0.33896
rs10000226-124_B_F_IFB1141217968:0 0.19228

Total number of rows: 555175

Table truncated, full table size 24159 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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