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Sample GSM488386 Query DataSets for GSM488386
Status Public on Sep 15, 2011
Title CHOP0266
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 1
age: 155
shimada: 2
sex: 2
ploidy: 1
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.4409233
rs10000010-124_B_F_IFB1137743663:0 -0.3786764
rs10000023-124_B_F_IFB1136477253:0 -0.0627505
rs10000030-124_B_R_IFB1137703207:0 -0.3316317
rs10000041-124_T_R_IFB1138580443:0 0.1513322
rs1000007-124_T_F_IFB1135763903:0 -0.1249093
rs10000081-124_B_F_IFB1142608068:0 -0.216571
rs10000092-124_T_R_IFB1136459723:0 0.5226229
rs10000121-124_B_R_IFB1136471760:0 -0.4928407
rs10000134-124_T_R_IFB1140474257:0 0.1576759
rs1000014-124_B_R_IFB1136184019:0 0.2056017
rs10000141-124_T_F_IFB1137734411:0 0.0953344
rs10000143-124_T_R_IFB1141671490:0 0.1530245
rs1000016-124_B_R_IFB1135100999:0 0.0563998
rs10000160-124_T_F_IFB1139532456:0 0.0621521
rs10000169-124_T_R_IFB1135612081:0 -0.292784
rs10000185-124_B_F_IFB1138742483:0 -0.6238629
rs10000201-124_T_F_IFB1139525076:0 0.1594818
rs1000022-124_B_F_IFB1135126284:0 -0.2147354
rs10000226-124_B_F_IFB1141217968:0 0.0898729

Total number of rows: 555175

Table truncated, full table size 24169 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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