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Sample GSM488457 Query DataSets for GSM488457
Status Public on Sep 15, 2011
Title CHOP0968
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 3
risk: 1
mycn: 2
age: 2005
shimada: 2
sex: 2
ploidy: 1
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.2490521
rs10000010-124_B_F_IFB1137743663:0 0.1250862
rs10000023-124_B_F_IFB1136477253:0 0.178133
rs10000030-124_B_R_IFB1137703207:0 -0.0051084
rs10000041-124_T_R_IFB1138580443:0 0.448366
rs1000007-124_T_F_IFB1135763903:0 -0.1823107
rs10000081-124_B_F_IFB1142608068:0 -0.2722716
rs10000092-124_T_R_IFB1136459723:0 -0.2411468
rs10000121-124_B_R_IFB1136471760:0 -0.1002935
rs10000134-124_T_R_IFB1140474257:0 0.0006545
rs1000014-124_B_R_IFB1136184019:0 -0.0027622
rs10000141-124_T_F_IFB1137734411:0 0.1383597
rs10000143-124_T_R_IFB1141671490:0 0.1573984
rs1000016-124_B_R_IFB1135100999:0 -0.1441785
rs10000160-124_T_F_IFB1139532456:0 -0.1719057
rs10000169-124_T_R_IFB1135612081:0 0.0371929
rs10000185-124_B_F_IFB1138742483:0 0.0565946
rs10000201-124_T_F_IFB1139525076:0 0.1803911
rs1000022-124_B_F_IFB1135126284:0 -0.2862491
rs10000226-124_B_F_IFB1141217968:0 0.216522

Total number of rows: 555175

Table truncated, full table size 24149 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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