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Sample GSM488470 Query DataSets for GSM488470
Status Public on Sep 15, 2011
Title CHOP0992
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 2
age: 1131
shimada: 2
sex: 2
ploidy: 1
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.0610215
rs10000010-124_B_F_IFB1137743663:0 0.3438997
rs10000023-124_B_F_IFB1136477253:0 -0.5878697
rs10000030-124_B_R_IFB1137703207:0 -0.0915585
rs10000041-124_T_R_IFB1138580443:0 -0.4338137
rs1000007-124_T_F_IFB1135763903:0 -0.183066
rs10000081-124_B_F_IFB1142608068:0 -0.2331832
rs10000092-124_T_R_IFB1136459723:0 0.2417785
rs10000121-124_B_R_IFB1136471760:0 -0.534272
rs10000134-124_T_R_IFB1140474257:0 0.0783186
rs1000014-124_B_R_IFB1136184019:0 -0.1463366
rs10000141-124_T_F_IFB1137734411:0 0.1229682
rs10000143-124_T_R_IFB1141671490:0 0.2225186
rs1000016-124_B_R_IFB1135100999:0 -0.0899956
rs10000160-124_T_F_IFB1139532456:0 -0.343874
rs10000169-124_T_R_IFB1135612081:0 0.1177867
rs10000185-124_B_F_IFB1138742483:0 -0.3203808
rs10000201-124_T_F_IFB1139525076:0 0.4592275
rs1000022-124_B_F_IFB1135126284:0 -0.0503551
rs10000226-124_B_F_IFB1141217968:0 0.2601838

Total number of rows: 555175

Table truncated, full table size 24150 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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