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Sample GSM488379 Query DataSets for GSM488379
Status Public on Sep 15, 2011
Title CHOP0236
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 1
risk: 1
mycn: 2
age: 30
shimada: 1
sex: 2
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.0334165
rs10000010-124_B_F_IFB1137743663:0 -0.2235045
rs10000023-124_B_F_IFB1136477253:0 0.1403249
rs10000030-124_B_R_IFB1137703207:0 -0.2462281
rs10000041-124_T_R_IFB1138580443:0 0.0977645
rs1000007-124_T_F_IFB1135763903:0 -0.0440077
rs10000081-124_B_F_IFB1142608068:0 -0.3165497
rs10000092-124_T_R_IFB1136459723:0 -0.0765174
rs10000121-124_B_R_IFB1136471760:0 -0.6986022
rs10000134-124_T_R_IFB1140474257:0 -0.0155833
rs1000014-124_B_R_IFB1136184019:0 -0.3942637
rs10000141-124_T_F_IFB1137734411:0 -0.5989289
rs10000143-124_T_R_IFB1141671490:0 0.4155249
rs1000016-124_B_R_IFB1135100999:0 -0.2068373
rs10000160-124_T_F_IFB1139532456:0 -0.0585194
rs10000169-124_T_R_IFB1135612081:0 0.0125835
rs10000185-124_B_F_IFB1138742483:0 -0.3467487
rs10000201-124_T_F_IFB1139525076:0 0.1966568
rs1000022-124_B_F_IFB1135126284:0 -0.1951296
rs10000226-124_B_F_IFB1141217968:0 -0.040724

Total number of rows: 555175

Table truncated, full table size 24126 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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