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Sample GSM488350 Query DataSets for GSM488350
Status Public on Sep 15, 2011
Title CHOP0061
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 2
age: 644
shimada: 2
sex: 2
ploidy: NA
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 -0.0554993
rs10000010-124_B_F_IFB1137743663:0 0.2184432
rs10000023-124_B_F_IFB1136477253:0 -0.2006268
rs10000030-124_B_R_IFB1137703207:0 -0.2136541
rs10000041-124_T_R_IFB1138580443:0 -0.1601247
rs1000007-124_T_F_IFB1135763903:0 -0.2980828
rs10000081-124_B_F_IFB1142608068:0 -0.6136013
rs10000092-124_T_R_IFB1136459723:0 0.3079925
rs10000121-124_B_R_IFB1136471760:0 -0.4806456
rs10000134-124_T_R_IFB1140474257:0 -0.1017152
rs1000014-124_B_R_IFB1136184019:0 0.053373
rs10000141-124_T_F_IFB1137734411:0 0.0158811
rs10000143-124_T_R_IFB1141671490:0 -0.2775322
rs1000016-124_B_R_IFB1135100999:0 -0.2319136
rs10000160-124_T_F_IFB1139532456:0 -0.2201361
rs10000169-124_T_R_IFB1135612081:0 0.0865406
rs10000185-124_B_F_IFB1138742483:0 -0.2345139
rs10000201-124_T_F_IFB1139525076:0 0.1564725
rs1000022-124_B_F_IFB1135126284:0 -0.1641491
rs10000226-124_B_F_IFB1141217968:0 0.069446

Total number of rows: 555175

Table truncated, full table size 24148 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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