NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM488427 Query DataSets for GSM488427
Status Public on Sep 15, 2011
Title CHOP0460
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 4
risk: 3
mycn: 2
age: 5581
shimada: 2
sex: 2
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 -0.2406326
rs10000010-124_B_F_IFB1137743663:0 0.2342174
rs10000023-124_B_F_IFB1136477253:0 -0.0805145
rs10000030-124_B_R_IFB1137703207:0 -0.1370421
rs10000041-124_T_R_IFB1138580443:0 0.3497135
rs1000007-124_T_F_IFB1135763903:0 -0.1461562
rs10000081-124_B_F_IFB1142608068:0 -0.2300914
rs10000092-124_T_R_IFB1136459723:0 0.515728
rs10000121-124_B_R_IFB1136471760:0 -0.7276865
rs10000134-124_T_R_IFB1140474257:0 0.4312447
rs1000014-124_B_R_IFB1136184019:0 -0.0183508
rs10000141-124_T_F_IFB1137734411:0 0.3441655
rs10000143-124_T_R_IFB1141671490:0 0.0895322
rs1000016-124_B_R_IFB1135100999:0 -0.6481327
rs10000160-124_T_F_IFB1139532456:0 -0.0398219
rs10000169-124_T_R_IFB1135612081:0 0.3612732
rs10000185-124_B_F_IFB1138742483:0 -0.0254069
rs10000201-124_T_F_IFB1139525076:0 0.4654872
rs1000022-124_B_F_IFB1135126284:0 0.2382222
rs10000226-124_B_F_IFB1141217968:0 0.2375859

Total number of rows: 555175

Table truncated, full table size 24155 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap