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Sample GSM488349 Query DataSets for GSM488349
Status Public on Sep 15, 2011
Title CHOP0060
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 2
age: 1221
shimada: NA
sex: 1
ploidy: 1
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 -0.0927857
rs10000010-124_B_F_IFB1137743663:0 0.7283973
rs10000023-124_B_F_IFB1136477253:0 -0.0996395
rs10000030-124_B_R_IFB1137703207:0 0.1523706
rs10000041-124_T_R_IFB1138580443:0 -0.0856775
rs1000007-124_T_F_IFB1135763903:0 -0.0607308
rs10000081-124_B_F_IFB1142608068:0 -0.5030974
rs10000092-124_T_R_IFB1136459723:0 0.2952805
rs10000121-124_B_R_IFB1136471760:0 -0.2308236
rs10000134-124_T_R_IFB1140474257:0 0.061235
rs1000014-124_B_R_IFB1136184019:0 -0.3528783
rs10000141-124_T_F_IFB1137734411:0 0.0366025
rs10000143-124_T_R_IFB1141671490:0 0.2132588
rs1000016-124_B_R_IFB1135100999:0 -0.1055874
rs10000160-124_T_F_IFB1139532456:0 -0.3411037
rs10000169-124_T_R_IFB1135612081:0 0.4590142
rs10000185-124_B_F_IFB1138742483:0 0.0334741
rs10000201-124_T_F_IFB1139525076:0 0.4409992
rs1000022-124_B_F_IFB1135126284:0 -0.1860251
rs10000226-124_B_F_IFB1141217968:0 0.2561333

Total number of rows: 555175

Table truncated, full table size 24118 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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