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Sample GSM488468 Query DataSets for GSM488468
Status Public on Sep 15, 2011
Title CHOP0986
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 1
risk: 1
mycn: 2
age: 755
shimada: 2
sex: 2
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.1636201
rs10000010-124_B_F_IFB1137743663:0 -0.2403521
rs10000023-124_B_F_IFB1136477253:0 -0.0669411
rs10000030-124_B_R_IFB1137703207:0 -0.517624
rs10000041-124_T_R_IFB1138580443:0 0.6698545
rs1000007-124_T_F_IFB1135763903:0 -0.0461063
rs10000081-124_B_F_IFB1142608068:0 -0.2129203
rs10000092-124_T_R_IFB1136459723:0 -0.0498285
rs10000121-124_B_R_IFB1136471760:0 -0.687471
rs10000134-124_T_R_IFB1140474257:0 -0.2140851
rs1000014-124_B_R_IFB1136184019:0 0.0768687
rs10000141-124_T_F_IFB1137734411:0 0.0138518
rs10000143-124_T_R_IFB1141671490:0 0.1044732
rs1000016-124_B_R_IFB1135100999:0 -0.1498496
rs10000160-124_T_F_IFB1139532456:0 -0.0388405
rs10000169-124_T_R_IFB1135612081:0 0.0241399
rs10000185-124_B_F_IFB1138742483:0 -0.6196478
rs10000201-124_T_F_IFB1139525076:0 0.2457139
rs1000022-124_B_F_IFB1135126284:0 0.0292334
rs10000226-124_B_F_IFB1141217968:0 -0.2755381

Total number of rows: 555175

Table truncated, full table size 24141 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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