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Sample GSM488388 Query DataSets for GSM488388
Status Public on Sep 15, 2011
Title CHOP0287
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 2
age: 999
shimada: 2
sex: 1
ploidy: NA
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.0138487
rs10000010-124_B_F_IFB1137743663:0 0.1915758
rs10000023-124_B_F_IFB1136477253:0 -0.0734744
rs10000030-124_B_R_IFB1137703207:0 -0.0351002
rs10000041-124_T_R_IFB1138580443:0 0.1864335
rs1000007-124_T_F_IFB1135763903:0 -0.3477283
rs10000081-124_B_F_IFB1142608068:0 -0.1271825
rs10000092-124_T_R_IFB1136459723:0 0.2903918
rs10000121-124_B_R_IFB1136471760:0 0.0470576
rs10000134-124_T_R_IFB1140474257:0 0.1073788
rs1000014-124_B_R_IFB1136184019:0 0.046304
rs10000141-124_T_F_IFB1137734411:0 0.0674531
rs10000143-124_T_R_IFB1141671490:0 0.0374581
rs1000016-124_B_R_IFB1135100999:0 -0.045562
rs10000160-124_T_F_IFB1139532456:0 -0.1518188
rs10000169-124_T_R_IFB1135612081:0 0.0402616
rs10000185-124_B_F_IFB1138742483:0 -0.129425
rs10000201-124_T_F_IFB1139525076:0 0.3008719
rs1000022-124_B_F_IFB1135126284:0 0.3119816
rs10000226-124_B_F_IFB1141217968:0 0.2197487

Total number of rows: 555175

Table truncated, full table size 24120 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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