NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM488447 Query DataSets for GSM488447
Status Public on Sep 15, 2011
Title CHOP0518
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 4
risk: 3
mycn: 1
age: 996
shimada: NA
sex: 2
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.1015932
rs10000010-124_B_F_IFB1137743663:0 0.7665061
rs10000023-124_B_F_IFB1136477253:0 0.0992492
rs10000030-124_B_R_IFB1137703207:0 0.2841216
rs10000041-124_T_R_IFB1138580443:0 -0.155541
rs1000007-124_T_F_IFB1135763903:0 -0.2991407
rs10000081-124_B_F_IFB1142608068:0 -0.4739769
rs10000092-124_T_R_IFB1136459723:0 0.4356625
rs10000121-124_B_R_IFB1136471760:0 -0.2576106
rs10000134-124_T_R_IFB1140474257:0 0.1959929
rs1000014-124_B_R_IFB1136184019:0 -0.2918802
rs10000141-124_T_F_IFB1137734411:0 0.2332622
rs10000143-124_T_R_IFB1141671490:0 0.4035501
rs1000016-124_B_R_IFB1135100999:0 -0.3455291
rs10000160-124_T_F_IFB1139532456:0 -0.4252475
rs10000169-124_T_R_IFB1135612081:0 0.4893548
rs10000185-124_B_F_IFB1138742483:0 -0.1553283
rs10000201-124_T_F_IFB1139525076:0 0.5292217
rs1000022-124_B_F_IFB1135126284:0 -0.1484777
rs10000226-124_B_F_IFB1141217968:0 0.3714728

Total number of rows: 555175

Table truncated, full table size 24142 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap