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Sample GSM488400 Query DataSets for GSM488400
Status Public on Sep 15, 2011
Title CHOP0340
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 1
risk: 1
mycn: 2
age: 416
shimada: 1
sex: 1
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.0725365
rs10000010-124_B_F_IFB1137743663:0 -0.050387
rs10000023-124_B_F_IFB1136477253:0 0.104458
rs10000030-124_B_R_IFB1137703207:0 -0.3130339
rs10000041-124_T_R_IFB1138580443:0 -0.11948
rs1000007-124_T_F_IFB1135763903:0 -0.1162661
rs10000081-124_B_F_IFB1142608068:0 -0.2433756
rs10000092-124_T_R_IFB1136459723:0 -0.1268606
rs10000121-124_B_R_IFB1136471760:0 -0.1277329
rs10000134-124_T_R_IFB1140474257:0 0.1374824
rs1000014-124_B_R_IFB1136184019:0 0.1984768
rs10000141-124_T_F_IFB1137734411:0 0.0818794
rs10000143-124_T_R_IFB1141671490:0 0.0301271
rs1000016-124_B_R_IFB1135100999:0 -0.0148608
rs10000160-124_T_F_IFB1139532456:0 -0.0986505
rs10000169-124_T_R_IFB1135612081:0 -0.0749707
rs10000185-124_B_F_IFB1138742483:0 -0.0046658
rs10000201-124_T_F_IFB1139525076:0 0.0456672
rs1000022-124_B_F_IFB1135126284:0 -0.0949061
rs10000226-124_B_F_IFB1141217968:0 0.0071394

Total number of rows: 555175

Table truncated, full table size 24142 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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