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Sample GSM488493 Query DataSets for GSM488493
Status Public on Sep 15, 2011
Title CHOP1084
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 1
risk: 1
mycn: 2
age: 386
shimada: 1
sex: 2
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.0884645
rs10000010-124_B_F_IFB1137743663:0 0.2229031
rs10000023-124_B_F_IFB1136477253:0 -0.0786477
rs10000030-124_B_R_IFB1137703207:0 -0.083589
rs10000041-124_T_R_IFB1138580443:0 0.3850986
rs1000007-124_T_F_IFB1135763903:0 -0.6585605
rs10000081-124_B_F_IFB1142608068:0 -0.0468688
rs10000092-124_T_R_IFB1136459723:0 -0.4662508
rs10000121-124_B_R_IFB1136471760:0 -0.4125418
rs10000134-124_T_R_IFB1140474257:0 -0.1042593
rs1000014-124_B_R_IFB1136184019:0 -0.226376
rs10000141-124_T_F_IFB1137734411:0 0.0263787
rs10000143-124_T_R_IFB1141671490:0 -0.0213115
rs1000016-124_B_R_IFB1135100999:0 -0.3960561
rs10000160-124_T_F_IFB1139532456:0 -0.1822871
rs10000169-124_T_R_IFB1135612081:0 -0.0229511
rs10000185-124_B_F_IFB1138742483:0 -0.4435529
rs10000201-124_T_F_IFB1139525076:0 0.1171867
rs1000022-124_B_F_IFB1135126284:0 -0.244505
rs10000226-124_B_F_IFB1141217968:0 -0.0009392

Total number of rows: 555175

Table truncated, full table size 24143 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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