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Sample GSM488354 Query DataSets for GSM488354
Status Public on Sep 15, 2011
Title CHOP0076
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 3
risk: 1
mycn: 2
age: 2235
shimada: 2
sex: 2
ploidy: 1
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.3601271
rs10000010-124_B_F_IFB1137743663:0 0.0160412
rs10000023-124_B_F_IFB1136477253:0 0.1458101
rs10000030-124_B_R_IFB1137703207:0 -0.0277493
rs10000041-124_T_R_IFB1138580443:0 0.6401696
rs1000007-124_T_F_IFB1135763903:0 0.0952189
rs10000081-124_B_F_IFB1142608068:0 -0.3308061
rs10000092-124_T_R_IFB1136459723:0 -0.3786881
rs10000121-124_B_R_IFB1136471760:0 -0.0714545
rs10000134-124_T_R_IFB1140474257:0 0.1522164
rs1000014-124_B_R_IFB1136184019:0 -0.1190324
rs10000141-124_T_F_IFB1137734411:0 0.1456937
rs10000143-124_T_R_IFB1141671490:0 0.1272389
rs1000016-124_B_R_IFB1135100999:0 -0.3048421
rs10000160-124_T_F_IFB1139532456:0 0.0366706
rs10000169-124_T_R_IFB1135612081:0 0.2191297
rs10000185-124_B_F_IFB1138742483:0 -0.0212805
rs10000201-124_T_F_IFB1139525076:0 0.1812676
rs1000022-124_B_F_IFB1135126284:0 -0.2104156
rs10000226-124_B_F_IFB1141217968:0 -0.0505661

Total number of rows: 555175

Table truncated, full table size 24157 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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