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Sample GSM488460 Query DataSets for GSM488460
Status Public on Sep 15, 2011
Title CHOP0553
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 6
risk: 1
mycn: 2
age: 92
shimada: 1
sex: 1
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 -0.0383305
rs10000010-124_B_F_IFB1137743663:0 -0.4113503
rs10000023-124_B_F_IFB1136477253:0 0.117997
rs10000030-124_B_R_IFB1137703207:0 -0.332908
rs10000041-124_T_R_IFB1138580443:0 0.3682278
rs1000007-124_T_F_IFB1135763903:0 -0.0025661
rs10000081-124_B_F_IFB1142608068:0 -0.1035183
rs10000092-124_T_R_IFB1136459723:0 0.0038275
rs10000121-124_B_R_IFB1136471760:0 -0.8910769
rs10000134-124_T_R_IFB1140474257:0 0.049691
rs1000014-124_B_R_IFB1136184019:0 0.0685666
rs10000141-124_T_F_IFB1137734411:0 0.0684148
rs10000143-124_T_R_IFB1141671490:0 0.1913935
rs1000016-124_B_R_IFB1135100999:0 -0.2121648
rs10000160-124_T_F_IFB1139532456:0 0.079624
rs10000169-124_T_R_IFB1135612081:0 -0.2092897
rs10000185-124_B_F_IFB1138742483:0 0.0407169
rs10000201-124_T_F_IFB1139525076:0 0.040039
rs1000022-124_B_F_IFB1135126284:0 0.1881612
rs10000226-124_B_F_IFB1141217968:0 -0.0352093

Total number of rows: 555175

Table truncated, full table size 24144 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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