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Sample GSM488409 Query DataSets for GSM488409
Status Public on Sep 15, 2011
Title CHOP0376
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 4
risk: 3
mycn: 2
age: 1443
shimada: 2
sex: 1
ploidy: 1
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.0005119
rs10000010-124_B_F_IFB1137743663:0 -0.2081129
rs10000023-124_B_F_IFB1136477253:0 -0.0967197
rs10000030-124_B_R_IFB1137703207:0 -0.0811404
rs10000041-124_T_R_IFB1138580443:0 0.0010129
rs1000007-124_T_F_IFB1135763903:0 -0.2131215
rs10000081-124_B_F_IFB1142608068:0 -0.6283084
rs10000092-124_T_R_IFB1136459723:0 0.0456418
rs10000121-124_B_R_IFB1136471760:0 -0.2839241
rs10000134-124_T_R_IFB1140474257:0 -0.0591279
rs1000014-124_B_R_IFB1136184019:0 0.0172907
rs10000141-124_T_F_IFB1137734411:0 -0.171333
rs10000143-124_T_R_IFB1141671490:0 -0.0045888
rs1000016-124_B_R_IFB1135100999:0 -0.1518261
rs10000160-124_T_F_IFB1139532456:0 -0.269155
rs10000169-124_T_R_IFB1135612081:0 -0.2349317
rs10000185-124_B_F_IFB1138742483:0 -0.3653979
rs10000201-124_T_F_IFB1139525076:0 0.0606808
rs1000022-124_B_F_IFB1135126284:0 0.0910064
rs10000226-124_B_F_IFB1141217968:0 -0.0108083

Total number of rows: 555175

Table truncated, full table size 24119 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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