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Sample GSM488434 Query DataSets for GSM488434
Status Public on Sep 15, 2011
Title CHOP0491
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 1
risk: 1
mycn: 2
age: 69
shimada: 1
sex: 1
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.1039945
rs10000010-124_B_F_IFB1137743663:0 -0.06264
rs10000023-124_B_F_IFB1136477253:0 -0.05438774
rs10000030-124_B_R_IFB1137703207:0 -0.4118176
rs10000041-124_T_R_IFB1138580443:0 0.07860658
rs1000007-124_T_F_IFB1135763903:0 0.1670539
rs10000081-124_B_F_IFB1142608068:0 -0.7644344
rs10000092-124_T_R_IFB1136459723:0 -0.1609508
rs10000121-124_B_R_IFB1136471760:0 -0.1435587
rs10000134-124_T_R_IFB1140474257:0 -0.2573572
rs1000014-124_B_R_IFB1136184019:0 -0.05899797
rs10000141-124_T_F_IFB1137734411:0 -0.1166282
rs10000143-124_T_R_IFB1141671490:0 -0.1259812
rs1000016-124_B_R_IFB1135100999:0 -0.08407347
rs10000160-124_T_F_IFB1139532456:0 -0.2894859
rs10000169-124_T_R_IFB1135612081:0 -0.143842
rs10000185-124_B_F_IFB1138742483:0 0.06754647
rs10000201-124_T_F_IFB1139525076:0 7.02178E-05
rs1000022-124_B_F_IFB1135126284:0 0.06499162
rs10000226-124_B_F_IFB1141217968:0 -0.3060723

Total number of rows: 555175

Table truncated, full table size 24332 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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