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Sample GSM488365 Query DataSets for GSM488365
Status Public on Sep 15, 2011
Title CHOP0153
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 2
age: 1116
shimada: 2
sex: 1
ploidy: NA
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.0717452
rs10000010-124_B_F_IFB1137743663:0 -0.3099614
rs10000023-124_B_F_IFB1136477253:0 0.0167629
rs10000030-124_B_R_IFB1137703207:0 -0.2241892
rs10000041-124_T_R_IFB1138580443:0 -0.1160984
rs1000007-124_T_F_IFB1135763903:0 -0.0749831
rs10000081-124_B_F_IFB1142608068:0 -0.3937438
rs10000092-124_T_R_IFB1136459723:0 0.133524
rs10000121-124_B_R_IFB1136471760:0 -0.2986963
rs10000134-124_T_R_IFB1140474257:0 0.1501184
rs1000014-124_B_R_IFB1136184019:0 0.0909365
rs10000141-124_T_F_IFB1137734411:0 -0.0504465
rs10000143-124_T_R_IFB1141671490:0 0.0797046
rs1000016-124_B_R_IFB1135100999:0 -0.3427407
rs10000160-124_T_F_IFB1139532456:0 0.0188468
rs10000169-124_T_R_IFB1135612081:0 0.0393919
rs10000185-124_B_F_IFB1138742483:0 -0.5009371
rs10000201-124_T_F_IFB1139525076:0 0.1816559
rs1000022-124_B_F_IFB1135126284:0 -0.1865803
rs10000226-124_B_F_IFB1141217968:0 0.1628149

Total number of rows: 555175

Table truncated, full table size 24166 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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