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Sample GSM488381 Query DataSets for GSM488381
Status Public on Sep 15, 2011
Title CHOP0238
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 1
risk: 1
mycn: 2
age: 300
shimada: 1
sex: 2
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.0961847
rs10000010-124_B_F_IFB1137743663:0 -0.1252606
rs10000023-124_B_F_IFB1136477253:0 -0.367206
rs10000030-124_B_R_IFB1137703207:0 -0.5977977
rs10000041-124_T_R_IFB1138580443:0 -0.6226394
rs1000007-124_T_F_IFB1135763903:0 -0.0989868
rs10000081-124_B_F_IFB1142608068:0 -0.7547075
rs10000092-124_T_R_IFB1136459723:0 -0.5621931
rs10000121-124_B_R_IFB1136471760:0 -0.2589813
rs10000134-124_T_R_IFB1140474257:0 -0.0996323
rs1000014-124_B_R_IFB1136184019:0 -0.4083749
rs10000141-124_T_F_IFB1137734411:0 -0.0729831
rs10000143-124_T_R_IFB1141671490:0 -0.3383085
rs1000016-124_B_R_IFB1135100999:0 -0.3824973
rs10000160-124_T_F_IFB1139532456:0 -0.2013936
rs10000169-124_T_R_IFB1135612081:0 -0.5471599
rs10000185-124_B_F_IFB1138742483:0 -0.3692001
rs10000201-124_T_F_IFB1139525076:0 -0.1554001
rs1000022-124_B_F_IFB1135126284:0 -0.1079149
rs10000226-124_B_F_IFB1141217968:0 -0.2533905

Total number of rows: 555175

Table truncated, full table size 24138 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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