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Sample GSM488534 Query DataSets for GSM488534
Status Public on Sep 15, 2011
Title CHOP1198
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 1
age: 720
shimada: 2
sex: 2
ploidy: NA
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.0433136
rs10000010-124_B_F_IFB1137743663:0 0.064114
rs10000023-124_B_F_IFB1136477253:0 0.1079051
rs10000030-124_B_R_IFB1137703207:0 0.0611841
rs10000041-124_T_R_IFB1138580443:0 -0.4364374
rs1000007-124_T_F_IFB1135763903:0 -0.2629394
rs10000081-124_B_F_IFB1142608068:0 -0.277681
rs10000092-124_T_R_IFB1136459723:0 0.3527928
rs10000121-124_B_R_IFB1136471760:0 -0.0425576
rs10000134-124_T_R_IFB1140474257:0 0.1754011
rs1000014-124_B_R_IFB1136184019:0 -0.2166716
rs10000141-124_T_F_IFB1137734411:0 0.1372019
rs10000143-124_T_R_IFB1141671490:0 0.2167917
rs1000016-124_B_R_IFB1135100999:0 -0.1397069
rs10000160-124_T_F_IFB1139532456:0 -0.3920142
rs10000169-124_T_R_IFB1135612081:0 0.136325
rs10000185-124_B_F_IFB1138742483:0 -0.1355186
rs10000201-124_T_F_IFB1139525076:0 0.3341297
rs1000022-124_B_F_IFB1135126284:0 -0.5349832
rs10000226-124_B_F_IFB1141217968:0 0.2515021

Total number of rows: 555175

Table truncated, full table size 24136 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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