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Sample GSM488344 Query DataSets for GSM488344
Status Public on Sep 15, 2011
Title CHOP0035
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 2
risk: 1
mycn: 2
age: 505
shimada: 1
sex: 2
ploidy: 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 21, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6433
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs1000000-124_B_F_IFB1142594991:0 0.3015532
rs10000010-124_B_F_IFB1137743663:0 -0.2711119
rs10000023-124_B_F_IFB1136477253:0 0.2465078
rs10000030-124_B_R_IFB1137703207:0 -0.2344672
rs10000041-124_T_R_IFB1138580443:0 0.2935809
rs1000007-124_T_F_IFB1135763903:0 0.0889596
rs10000081-124_B_F_IFB1142608068:0 -0.0799278
rs10000092-124_T_R_IFB1136459723:0 -0.4241364
rs10000121-124_B_R_IFB1136471760:0 -0.3886044
rs10000134-124_T_R_IFB1140474257:0 0.13084
rs1000014-124_B_R_IFB1136184019:0 -0.0449913
rs10000141-124_T_F_IFB1137734411:0 0.0907836
rs10000143-124_T_R_IFB1141671490:0 -0.1190994
rs1000016-124_B_R_IFB1135100999:0 0.0555684
rs10000160-124_T_F_IFB1139532456:0 0.0605949
rs10000169-124_T_R_IFB1135612081:0 -0.3129394
rs10000185-124_B_F_IFB1138742483:0 -0.0288606
rs10000201-124_T_F_IFB1139525076:0 0.047152
rs1000022-124_B_F_IFB1135126284:0 0.0294544
rs10000226-124_B_F_IFB1141217968:0 -0.1233366

Total number of rows: 555175

Table truncated, full table size 24121 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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